PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031497m
Common NameCISIN_1g031497mg, LOC102628993
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 159aa    MW: 17283 Da    PI: 8.1312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031497mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  orange1.1g031497m 47 FSCNYCQRKFYSSQALGGHQNAH 69
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDYQPNTSLH LSLPSNQLNL DLVLEPSPSS NCSSPSPHSP AAEPRIFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSK EFSSAVRAHG VSNNPRSGSS SIGSSSHASR IHQGHAHAGK  120
FAGEFDYGIR EVNYSSMSYS PHENVQDELS QLDLSLRL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453394.11e-112zinc finger protein 2
RefseqXP_006474166.11e-112zinc finger protein 2
RefseqXP_024952964.11e-112zinc finger protein 2
SwissprotQ392614e-35ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A067E5K51e-111A0A067E5K5_CITSI; Uncharacterized protein
TrEMBLV4WIT31e-111V4WIT3_9ROSI; Uncharacterized protein
STRINGXP_006474166.11e-111(Citrus sinensis)
STRINGXP_006453394.11e-111(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-32zinc finger protein 2