PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g031483m | ||||||||
Common Name | CISIN_1g031483mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 17763.6 Da PI: 4.7474 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.1 | 2.7e-20 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l orange1.1g031483m 10 RGNFTEEEDDLIIRLHKLLGNR-WALIAKRVP-GRTDNQVKNYWNSHL 55 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.07E-19 | 1 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 1 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.224 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-19 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-19 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-16 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MNYLSPNVNR GNFTEEEDDL IIRLHKLLGN RWALIAKRVP GRTDNQVKNY WNSHLSKKLG 60 IKDQTRGVGD SPSLTQSQKI QPITDQNANA IIDPCDENTK SYSIDNGTQK AVNVSGSSTQ 120 ESNTTDESFI NSLWNSCDDD LDLGTFFTMK GFVDGYSLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470329.1 | 1e-114 | transcription factor WER-like | ||||
TrEMBL | A0A067FFQ1 | 1e-114 | A0A067FFQ1_CITSI; Uncharacterized protein | ||||
STRING | XP_006470329.1 | 1e-113 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-44 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g031483m |