PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g031444m

Common Name

CISIN_1g031444mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 160aa MW: 18034.8 Da PI: 5.889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g031444m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.8e-10	6	57	3	45
SS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwq 45 W+ eEd+ + +a++++ + +W +Ia++++ R+ +++k ++q orange1.1g031444m 6 TWSREEDKAFENAIAMHCIEeddskeeqqqQWQKIASMVP-SRSVEELKQHYQ 57 5**************999****************.*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.236	1	60	IPR017877	Myb-like domain
SMART	SM00717	2.4E-7	3	62	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-8	6	57	IPR001005	SANT/Myb domain
CDD	cd00167	8.67E-6	6	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-7	6	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-9	7	67	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSSAATWSRE EDKAFENAIA MHCIEEDDSK EEQQQQWQKI ASMVPSRSVE ELKQHYQILL 60 EDVNAIEAGN IPLPNYVGED RATSSTKDFH GPSTAADNRS NGVYGSGFSG LSHDPSGHGS 120 KGSSKSEQER RKGIPWTEEE HRQIWKRRLE KHFKKFCDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-14	3	76	7	73	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.4759	1e-167	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485754.1	1e-100	transcription factor MYBS1
TrEMBL	A0A067FM46	1e-115	A0A067FM46_CITSI; Uncharacterized protein
STRING	XP_006485754.1	1e-99	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3556	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	1e-30	MYB family protein

Link Out ? help Back to Top
Phytozome	orange1.1g031444m