PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g031017m

Common Name

CISIN_1g026124mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 168aa MW: 18229.9 Da PI: 6.0861

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g031017m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.4e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ orange1.1g031017m 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	28.4	3.4e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek + +fC +++ l+C+dC + +H+ H orange1.1g031017m 53 KLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPgslsanH 94 6789****************************9435555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.3	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.40E-6	3	47	No hit	No description
Pfam	PF00643	1.1E-5	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	8.9E-10	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.0E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.958	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.9E-8	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	1.27E-6	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60 QEKAAFIFCV EDRALFCKDC DEPIHSPGSL SANHQRFLAT GIRVALSSSC SKDAERNISE 120 PPNQQASQTS VKMPTQQSSG ISSPWAVDDF LQFSDFESSG KVIKIYM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6122	0.0	callus\| flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024044545.1	1e-113	B-box zinc finger protein 25
Refseq	XP_024954583.1	1e-113	B-box zinc finger protein 25-like
Swissprot	Q9SID1	3e-75	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A067DXG7	1e-118	A0A067DXG7_CITSI; Uncharacterized protein
STRING	XP_006478724.1	1e-112	(Citrus sinensis)
STRING	XP_006442999.1	1e-112	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-77	salt tolerance homologue

Link Out ? help Back to Top
Phytozome	orange1.1g031017m

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]