PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g030971m | ||||||||
Common Name | CISIN_1g030971mg, LOC102613347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 169aa MW: 18078.9 Da PI: 10.7271 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.7e-20 | 11 | 45 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG+++rkk++ orange1.1g030971m 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45 ********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-14 | 5 | 58 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 6 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-16 | 10 | 45 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.8E-18 | 11 | 45 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 11 | 36 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.65E-12 | 11 | 45 | No hit | No description |
PROSITE profile | PS50114 | 12.295 | 11 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MNQNDSNLKY CTDCKTTKTP LWRGGPAGPK SLCNACGIRF RKKKRVFEGL KKRSDKKKDK 60 TTNAAAAAAS ASAKVVTEKA DGTGNASCCV NGLGDSFKMR LMALGQEVLL QRSSPSSSSP 120 STTSKSSPSL FLPSVVAKKQ RCQRKRKLKE EEQAAFSLMA LSCGFVFA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006472168.1 | 1e-119 | GATA transcription factor 15 | ||||
Refseq | XP_024951794.1 | 1e-119 | GATA transcription factor 15 | ||||
Refseq | XP_024951795.1 | 1e-119 | GATA transcription factor 15 | ||||
Refseq | XP_024951796.1 | 1e-119 | GATA transcription factor 15 | ||||
TrEMBL | A0A067GPU9 | 1e-118 | A0A067GPU9_CITSI; Uncharacterized protein | ||||
STRING | XP_006472168.1 | 1e-118 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16911 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-20 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g030971m |
Entrez Gene | 102613347 |