PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g030923m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 19887.2 Da PI: 10.5417 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 7 | 27 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr f+r G+C +Gd CkF+H orange1.1g030923m 7 VCRAFQR-GECTRGDGCKFSHN 27 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.859 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-4 | 4 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 5 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-6 | 7 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-6 | 7 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MREERGVCRA FQRGECTRGD GCKFSHNEQR AANTGGGPQD RSSRWGHEKF EGFSWGKNDS 60 SSRATGSGRV ALEGNPNQSD RREEKRSIRH DHREKPREDH GRREDKRSRR HSDNNEFEAR 120 SREDHYRRDE KRPKRHESES YLREDQDRRG GDKSSTGRGD SSSHRHRER* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1688 | 1e-153 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425052.1 | 1e-116 | zinc finger CCCH domain-containing protein 42 isoform X1 | ||||
Swissprot | Q9SD61 | 7e-17 | C3H42_ARATH; Zinc finger CCCH domain-containing protein 42 | ||||
TrEMBL | A0A2H5NCF1 | 1e-114 | A0A2H5NCF1_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4SCP3 | 1e-114 | V4SCP3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425052.1 | 1e-115 | (Citrus clementina) |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g030923m |
Publications ? help Back to Top | |||
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