PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g030615m | ||||||||
Common Name | CISIN_1g029862mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 175aa MW: 19402.2 Da PI: 9.3138 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 183.7 | 1e-56 | 12 | 147 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 l vsvP +slf++vtvrCGhC++ll vn+ a q+++ ++ ++++ + e++ +k +++++++ s + e ++e+pr+p orange1.1g030615m 12 LGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP--------QKQHINLEDSITKDCGSSSKCNKFSSAF----ETAEHETPRMP 91 77**************************9999999998885........4455555555555555555554444444....5678999**99 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl orange1.1g030615m 92 P-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147 9.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-61 | 12 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-8 | 91 | 141 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-5 | 95 | 141 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MATNVLVFLF FLGVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ DPQKQHINLE 60 DSITKDCGSS SKCNKFSSAF ETAEHETPRM PPIRPPEKRQ RVPSAYNRFI KEEIQRIKAS 120 NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDKA AAYAEGTQKS NGFY* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487834.1 | 1e-127 | putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q9XFB0 | 3e-66 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A067E1H9 | 1e-128 | A0A067E1H9_CITSI; Uncharacterized protein | ||||
STRING | XP_006487832.1 | 1e-117 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-67 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g030615m |
Publications ? help Back to Top | |||
---|---|---|---|
|