PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g030584m | ||||||||
Common Name | CISIN_1g030584mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 19759.2 Da PI: 8.8937 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.1 | 1.7e-19 | 52 | 137 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++Y+k+ GF v++++skk +g tf C ++g+++++ ++ +r++++t+tgC+ak+ +++dgkw+v +l leHnH l+p orange1.1g030584m 52 YYKAYGKQKGFPVKRRTSKKG-SDGILRYVTFACGRSGTSRSNPSN---FSRSQTNTKTGCNAKVGGCLDEDGKWQVRTLILEHNHGLNP 137 8**************999887.899999*************99988...8999999******************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-16 | 52 | 137 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKDLEKEGLV ILKDDGLEGN VDEFENVEDV EKRVDEPEFG ISFDSADEMF TYYKAYGKQK 60 GFPVKRRTSK KGSDGILRYV TFACGRSGTS RSNPSNFSRS QTNTKTGCNA KVGGCLDEDG 120 KWQVRTLILE HNHGLNPGKS MYFRCNRNSS SHVKRQLETN DRAGKKLLNM MMSHS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015384134.1 | 1e-116 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3 | ||||
TrEMBL | A0A067GVL3 | 1e-128 | A0A067GVL3_CITSI; Uncharacterized protein | ||||
STRING | XP_006472948.1 | 1e-114 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 5e-14 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g030584m |