PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g030419m

Common Name

CISIN_1g030419mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 178aa MW: 20847.2 Da PI: 10.3634

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g030419m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.9e-27	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk+++eHnH+l+ orange1.1g030419m 12 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLV 100 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-24	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEFDSEEAAK IFYDEYARRV GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFGP 60 VRKPRPSTRE GCKAMIHVKF DKSGKWVITK FVKEHNHPLV VAPREARQTM DEKDKKIQEL 120 TVELRNKKRL CALYQEQLTT FMKVVEVHSD HLSKKVQNVI NNLKEFESIE KELSRNR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443015.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024043383.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024043384.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X3
Refseq	XP_024955241.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024955242.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024955243.1	1e-129	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	2e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067DXF5	1e-128	A0A067DXF5_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QMM3	1e-127	A0A2H5QMM3_CITUN; Uncharacterized protein
TrEMBL	V4TX06	1e-128	V4TX06_9ROSI; Uncharacterized protein
STRING	XP_006478773.1	1e-127	(Citrus sinensis)
STRING	XP_006443015.1	1e-128	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-107	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g030419m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]