PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g030359m

Common Name

CISIN_1g028980mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

YABBY

Protein Properties

Length: 180aa MW: 20253.2 Da PI: 10.4122

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g030359m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	130.2	2.7e-40	75	152	92	170
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++++k ++e+ r p PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g030359m 75 SAMRTPTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 152 222222222.33333334455668899**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-40	19	152	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	92	145	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	99	146	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRALLQSMVR EYGSRFSVTV MARCSSSSGF LLQLLLLLLG ITLFEEIEAF KAPSYASPEC 60 RIDLGSSSKC NNKISAMRTP TNKATEERVV NRRESPHSTT PEKRQRVPSA YNQFIKEEIQ 120 RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLEANNQP KLDDASGNRL MSRTALRNK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11734	3e-66	callus\| flower\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	3e-54	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667746	3e-54	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450895.1	3e-93	axial regulator YABBY 5 isoform X1
Refseq	XP_006475868.1	3e-93	axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	3e-45	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067GKS6	1e-130	A0A067GKS6_CITSI; Uncharacterized protein
STRING	XP_006475868.1	1e-92	(Citrus sinensis)
STRING	XP_006450895.1	1e-92	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-47	YABBY family protein

Link Out ? help Back to Top
Phytozome	orange1.1g030359m

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]