PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030331m
Common NameCISIN_1g027547mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 180aa    MW: 20276.2 Da    PI: 7.9713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030331mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-133077655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                       + +E++RRd++++ +++L++llP++   psk  ls  + + +A++YIk+L+
  orange1.1g030331m 30 KTIEKNRRDQMKNLYSTLKSLLPNQ---PSKEeLSLPDQVDEAINYIKMLE 77
                       689*********************7...55555***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-142395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1922476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-112895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-53082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-93077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-83281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGYLGQSLEA KGSMKRKQCS SSSPTKIERK TIEKNRRDQM KNLYSTLKSL LPNQPSKEEL  60
SLPDQVDEAI NYIKMLETKL KECKKRKESL QGRERSHACI SDGTEARLMT SSSPKAPEIE  120
IHEMGSNLEV ILTSGVDDQF IFYEVIRILH QDGAEILNAK FSVVGNTIFH VIHAEVCYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238EKNRRDQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.73030.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447292.11e-114transcription factor bHLH162
RefseqXP_006469875.21e-114transcription factor bHLH162-like
TrEMBLA0A067EFM91e-130A0A067EFM9_CITSI; Uncharacterized protein
STRINGXP_006469875.11e-114(Citrus sinensis)
STRINGXP_006447292.11e-114(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-36bHLH family protein