PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g030306m | ||||||||
Common Name | CISIN_1g030306mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20889.5 Da PI: 4.7185 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.6 | 2.6e-15 | 6 | 145 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk..................kvka..eekewyfFskrdkkyatgkrknra 77 ++P d+ l+ + L++k+ ++++e+ + + +++i++++P d+ p +ek +y ++++ y ++r orange1.1g030306m 6 YNPFDQSLI-KQLNNKIIDEPVEFPD-LITTEINDHHPADFfPGsllrafctsfnnvqlpkgG--DrdREKGCYVLTPKHLLYGLTWLPERR 93 68*******.66*********99966.55669********95436889999988877665432..13356688***********99999999 PP NAM 78 tksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+gyWk g d +++ + g+lv +k++++f++ ++ g+ktdW m eyrl orange1.1g030306m 94 AKNGYWKPYGYiDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRL 145 9********98799************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.074 | 1 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-8 | 6 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-18 | 6 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
METDPYNPFD QSLIKQLNNK IIDEPVEFPD LITTEINDHH PADFFPGSLL RAFCTSFNNV 60 QLPKGGDRDR EKGCYVLTPK HLLYGLTWLP ERRAKNGYWK PYGYIDGRIF GACGKLVAIK 120 QSFTFHEPGE NIGRKTDWNM TEYRLLKHSC TSLDSWVLCK IYWESEIIEN EDFSDEEEE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479704.1 | 1e-111 | NAC domain-containing protein 72-like | ||||
Refseq | XP_024043265.1 | 1e-111 | NAC domain-containing protein 68-like | ||||
TrEMBL | A0A067FZ58 | 1e-132 | A0A067FZ58_CITSI; Uncharacterized protein | ||||
STRING | XP_006479704.1 | 1e-111 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 4e-15 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g030306m |