PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030237m
Common NameCISIN_1g022924mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 182aa    MW: 19895.1 Da    PI: 7.7062
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030237mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.38e-1792127134
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg
  orange1.1g030237m  92 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 127
                        *****99999***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.0E-162365IPR010402CCT domain
PROSITE profilePS5101712.5312365IPR010402CCT domain
PROSITE profilePS501149.88286145IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-1586139IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-1288135No hitNo description
Gene3DG3DSA:3.30.50.105.8E-1690132IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.37E-1391139No hitNo description
PfamPF003201.2E-1492127IPR000679Zinc finger, GATA-type
PROSITE patternPS00344092119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEVIPHSQRG IADYPAKCTQ PQRAASLDRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG  60
QFTSAKKCEG GALGWSNAQD PGQDDSPSET SCTHCGISSK STPMMRRGPS GPRSLCNACG  120
LFWANKGALR DLGKKMEDQP LTPAEQGEGE VNDSDCGTAA HTDNELVSFS NDDDSALISE  180
H*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472435.11e-134GATA transcription factor 25 isoform X1
SwissprotQ9LRH62e-63GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A067GRC91e-133A0A067GRC9_CITSI; Uncharacterized protein
STRINGXP_006472435.11e-133(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-66GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]