PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030060m
Common NameCISIN_1g026312mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Whirly
Protein Properties Length: 184aa    MW: 19728.8 Da    PI: 10.2238
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030060mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly148.42.6e-46651712110
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        vyk+kaa++v++v+ptf +ldsg lk+kr+G +ll++a+a++erkydW kkq+fals+tev++l+ +++++s+effhdpa+ +sn+G++rk+
  orange1.1g030060m  65 VYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKS 156
                        8******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnls 110
                        l+++  +dG  +f++l 
  orange1.1g030060m 157 LSIKANADG--FFISLI 171
                        ****99996..788875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-4952170IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-3857165IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.1E-4565172IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMKLSRSLLS SRSQLSEKLL AGEANYVRDG LKSHVLISQA GMSTTGHDVS AKGSLGGRIF  60
APYYVYKGKA AFSVDPVLPT FMKLDSGDLK VKRKGVILLT FAPAIGERKY DWAKKQHFAL  120
SPTEVGSLLT MGPRDSSEFF HDPAMLSSNA GQMRKSLSIK ANADGFFISL ICIASSHGLG  180
PVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-57531765130StWhy2
3n1i_A1e-57531765130protein StWhy2
3n1j_A1e-57531765130Protein StWhy2
3n1k_A1e-57531765130protein StWhy2
3n1l_A1e-57531765130protein StWhy2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.70690.0callus| flower| fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024954278.11e-131single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotD9J0341e-65WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A067EJJ71e-130A0A067EJJ7_CITSI; Uncharacterized protein
STRINGXP_006478304.11e-120(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-58WHIRLY 2