PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g029989m

Common Name

CISIN_1g029989mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 185aa MW: 21527.4 Da PI: 9.4096

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g029989m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4e-26	11	102	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ Y+++vGF++r++++++s ++++i+ r++vCskeg+r+ + ++ + +r +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel orange1.1g029989m 11 EFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFRTGKCTN--RGSRvllPRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHEL 100 6***************************************99888..33333569********************************9 PP FAR1 90 ap 91 +p orange1.1g029989m 101 NP 102 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-23	11	102	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEFDSAEDAR EFYEMYGRRV GFTIRNNRTR RSLKDNSIIG REYVCSKEGF RTGKCTNRGS 60 RVLLPRPATR EGCNAMLRIA AKDGGKWVIY GFVKEHNHEL NPSKIPPRRS HRIAFSEDVK 120 DLKIRELSTE LHHEKKKSAA YQEQLCMVLK FIEEHTQRMS LKVQVVTNNM QELESEERES 180 SYPD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478709.1	1e-136	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024045388.1	1e-136	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A067E4W1	1e-135	A0A067E4W1_CITSI; Uncharacterized protein
STRING	XP_006478704.1	1e-135	(Citrus sinensis)
STRING	XP_006443022.1	1e-135	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g029989m