PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g029970m

Common Name

CISIN_1g029970mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 185aa MW: 19774.6 Da PI: 4.9665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g029970m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.7	1.1e-20	12	85	23	96
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 p++q++++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+++e +l orange1.1g029970m 12 PQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVL 85 8999*****************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.545	1	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-16	12	83	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLRQSIQWIG TPQAQANATV FVAKFFGRAG LMSFISAVPE TQRPSLFQSL LYEAVGRTVN 60 PVSGAVGLLW TGNWNVCQSA VERVLCGGAL QPLPCPLAPE LDDVSESAVN CTNNSPKDVI 120 TPPPKRKAVS DFQDDLHLGL KPCLPEKLRA ETPSEESETT TSGTGSDNCC SEVAGEKKLL 180 RLFL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2620	0.0	flower\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006486929.1	1e-131	LOB domain-containing protein 38-like
Refseq	XP_024957504.1	1e-131	LOB domain-containing protein 38-like
Swissprot	Q9SN23	6e-51	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A067F3U2	1e-132	A0A067F3U2_CITSI; Uncharacterized protein
STRING	XP_006486929.1	1e-131	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23107	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-51	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	orange1.1g029970m