PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029862m
Common NameCISIN_1g029862mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 187aa    MW: 20790.7 Da    PI: 8.5774
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029862mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY233.35.6e-7221592170
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        +++ +se+vCyv+Cn+CntilavsvP +slf++vtvrCGhC++ll vn+  a q+++ ++        +l++++ + e+++++ +  ++s+ 
  orange1.1g029862m   2 SLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP-------QLQKQHINLEDSITK-DCGSSSKC 85 
                        567799*******************************************999999999985.......332222222222222.22233333 PP

              YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++ ss    e  ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  orange1.1g029862m  86 NKFSSA--FETAEHETPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159
                        333332..35678999**999.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-746159IPR006780YABBY protein
SuperFamilySSF470951.7E-8103153IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5107153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSLDLASERV CYVHCNYCNT ILAVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ  60
DPQLQKQHIN LEDSITKDCG SSSKCNKFSS AFETAEHETP RMPPIRPPEK RQRVPSAYNR  120
FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGNKQAKLD KAAAYAEGTQ  180
KSNGFY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487832.11e-139putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-81YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A067E4Z31e-138A0A067E4Z3_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3N31e-138A0A2H5Q3N3_CITUN; Uncharacterized protein
STRINGXP_006487832.11e-138(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.15e-84YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]