PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029682m | ||||||||
Common Name | CISIN_1g028980mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21092 Da PI: 8.3394 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 202.4 | 1.7e-62 | 7 | 162 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhC++l svn+a a q l+ ++ + ++ ++ +++ ++++ +++ orange1.1g029682m 7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV-------HHHQAPSYASPECRIDLGSSSKCNNK 91 5689************************************************9999995.......22333333344444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+++ ++n+ e +v+ PPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g029682m 92 ISAMRTPTNKATEE----RVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 162 44434344444443....4899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-69 | 9 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.31E-8 | 98 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 108 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSSCGIDVAP EQLCYIPCNF CNIVLAVSVP CSSLLDIVTV RCGHCSNLWS VNMAAAFQSL 60 SWQDVHHHQA PSYASPECRI DLGSSSKCNN KISAMRTPTN KATEERVVNP PEKRQRVPSA 120 YNQFIKEEIQ RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLEANNQP KLDDASGNRL 180 MSRTALRNK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11734 | 0.0 | callus| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090216 | 9e-70 | BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450896.1 | 1e-139 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006475869.1 | 1e-139 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 5e-83 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GXR1 | 1e-139 | A0A067GXR1_CITSI; Uncharacterized protein | ||||
STRING | XP_006475868.1 | 1e-136 | (Citrus sinensis) | ||||
STRING | XP_006450895.1 | 1e-136 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-85 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029682m |
Publications ? help Back to Top | |||
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