PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029592m
Common NameCISIN_1g029592mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21577.4 Da    PI: 6.7979
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029592mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.14.2e-0726601549
                       HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        Rr g++KK +E+ +LC+ e    if + gk   +
  orange1.1g029592m 26 IRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISF 60
                       5*******************999999998886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-9463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.4464IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-13475IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-6626IPR002100Transcription factor, MADS-box
PfamPF003191.8E-62060IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-62641IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-64162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MTGMGRKKTQ MKMNQGNDAR QVVPPIRRSG LFKKFSEVTT LCALETTFFI FFPAGKAISF  60
AHPGDEPVIT NLARTGNPDP GSYQRTLADH EATVQALNKE YHDLLEQLEA EKKRGKILQK  120
RKMMNQQSYC RHLWETPVDE LNLEELLTLN AMIEDLQEKL QKHLAERSAQ TDAPTEGSSV  180
DPNGHEKEPG N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426168.11e-143agamous-like MADS-box protein AGL61
TrEMBLA0A067GGF31e-141A0A067GGF3_CITSI; Uncharacterized protein
TrEMBLV4RX021e-141V4RX02_9ROSI; Uncharacterized protein
STRINGXP_006426168.11e-142(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-19AGAMOUS-like 61