PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g029424m

Common Name

CISIN_1g029424mg, LOC107178343

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 194aa MW: 21519.7 Da PI: 5.3797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g029424m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H orange1.1g029424m 32 YDCTFCKRGFSNAQALGGHMNIH 54 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.55E-6	30	59	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.6E-5	30	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.344	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
METDHDPPSQ ENQEQETSDD QQRAAASPIR SYDCTFCKRG FSNAQALGGH MNIHRKDKAK 60 LKQAASSNNL YQQSFDISKI RASYSQISTI RPSMEVMSNS QDRSIATQRP NWILGAENDA 120 MKTEKTQVGD VRKLSLFVEG SSPLKIDQRE ATSTEKGLLS SSSEEEDLDL ELRLGPEPRQ 180 DSSTPATGTK KFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388797.1	1e-143	transcriptional regulator TAC1
TrEMBL	A0A067FTW8	1e-141	A0A067FTW8_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NCW4	1e-141	A0A2H5NCW4_CITUN; Uncharacterized protein
STRING	XP_006424902.1	1e-141	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g029424m
Entrez Gene	107178343