PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029411m | ||||||||
Common Name | CISIN_1g029411mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 195aa MW: 22159.9 Da PI: 6.1405 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.2e-10 | 137 | 170 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ ++ LA+++gL+++q+ +WF N+R ++ orange1.1g029411m 137 WPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 170 58*****************************885 PP | |||||||
2 | ELK | 36.4 | 1.1e-12 | 90 | 111 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+qLlr Ysg+LgsLkqEF+ orange1.1g029411m 90 DLKDQLLRRYSGSLGSLKQEFL 111 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 5.1E-22 | 9 | 60 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-20 | 13 | 59 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.58 | 90 | 110 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.7E-10 | 90 | 111 | IPR005539 | ELK domain |
SMART | SM01188 | 2.5E-6 | 90 | 111 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.552 | 110 | 173 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-14 | 112 | 177 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-19 | 112 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 115 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.91E-12 | 122 | 174 | No hit | No description |
Pfam | PF05920 | 9.7E-16 | 130 | 169 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSRSSAGTAA SRVGDDPALD QFMEAYCEML TKYEQELTKP FKDASLFLSE IDAQLKTLTV 60 SSNISGQSGS SEEEIDVKDH CIDPLAEDRD LKDQLLRRYS GSLGSLKQEF LKKKKKGKLP 120 KEARQLLLDW WSRHHRWPYP SEPQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFN 180 DISIMNGPEG DAAV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF533702 | 2e-33 | EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046106.1 | 1e-129 | homeobox protein knotted-1-like LET6 | ||||
Refseq | XP_024950608.1 | 1e-129 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | P46608 | 1e-82 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A067ESV6 | 1e-141 | A0A067ESV6_CITSI; Uncharacterized protein | ||||
STRING | XP_006469758.1 | 1e-116 | (Citrus sinensis) | ||||
STRING | XP_006447622.1 | 1e-116 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6473 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 3e-59 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029411m |
Publications ? help Back to Top | |||
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