PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029383m
Common NameCISIN_1g024670mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 195aa    MW: 21546.5 Da    PI: 6.5415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029383mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12551354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++h+e+ErrRR+riN  +++Lr l+P++     +K++Ka+ L ++++ +k+L
  orange1.1g029383m  5 KNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKEL 51
                       58************************99.....9************998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.713251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-13653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.84E-491159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVALKNHSEA ERRRRERINA HLDTLRGLVP PNGKMDKATL LAEVIRQVKE LKTNAIEASK  60
GFLIPTDADE VKVEPYNDEE AGDADFLYKA SICCEYRPEL MSDLRQALDA LPLKMLKAEI  120
STLGGRLKNV IVFTSCKEGN AEASQTLAND VQQALNSVLE KASPSPEYSP RTTLPNKRQR  180
ISFLDSSSSS SREL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11015ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449491.11e-140transcription factor bHLH30
RefseqXP_006467661.11e-140transcription factor bHLH30
TrEMBLA0A067GDR11e-139A0A067GDR1_CITSI; Uncharacterized protein
TrEMBLA0A067GQY41e-138A0A067GQY4_CITSI; Uncharacterized protein
TrEMBLA0A2H5N3B21e-138A0A2H5N3B2_CITUN; Uncharacterized protein
TrEMBLV4UKA31e-138V4UKA3_9ROSI; Uncharacterized protein
STRINGXP_006467661.11e-139(Citrus sinensis)
STRINGXP_006449491.11e-139(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-38bHLH family protein