PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029383m | ||||||||
Common Name | CISIN_1g024670mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21546.5 Da PI: 6.5415 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 5 | 51 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ +K++Ka+ L ++++ +k+L orange1.1g029383m 5 KNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKEL 51 58************************99.....9************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.713 | 2 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 5 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-13 | 6 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-13 | 6 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.84E-4 | 91 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MVALKNHSEA ERRRRERINA HLDTLRGLVP PNGKMDKATL LAEVIRQVKE LKTNAIEASK 60 GFLIPTDADE VKVEPYNDEE AGDADFLYKA SICCEYRPEL MSDLRQALDA LPLKMLKAEI 120 STLGGRLKNV IVFTSCKEGN AEASQTLAND VQQALNSVLE KASPSPEYSP RTTLPNKRQR 180 ISFLDSSSSS SREL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 15 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449491.1 | 1e-140 | transcription factor bHLH30 | ||||
Refseq | XP_006467661.1 | 1e-140 | transcription factor bHLH30 | ||||
TrEMBL | A0A067GDR1 | 1e-139 | A0A067GDR1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067GQY4 | 1e-138 | A0A067GQY4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5N3B2 | 1e-138 | A0A2H5N3B2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UKA3 | 1e-138 | V4UKA3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006467661.1 | 1e-139 | (Citrus sinensis) | ||||
STRING | XP_006449491.1 | 1e-139 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029383m |