PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029280m | ||||||||
Common Name | CISIN_1g029280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 22817.4 Da PI: 9.6255 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 24 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+ Fe+ + ++ +++ + A++lgL+ rqV +WFqN+Ra++k orange1.1g029280m 24 KNKRRFSDEQIRLLESIFESeSTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79 56789**************88**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.9 | 1.4e-38 | 25 | 112 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +krr+s+eq++lLE+ Fe+e+ kLep++K+++a+eLglqprqva+WFqn+RAR+k+kq+E+dy++L+++yd+l++ e+L ke+e+L orange1.1g029280m 25 NKRRFSDEQIRLLESIFESEStKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLL 112 79****************9999*************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-16 | 17 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 20 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-16 | 22 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 24 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-17 | 25 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-12 | 29 | 82 | No hit | No description |
PRINTS | PR00031 | 3.1E-5 | 52 | 61 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 61 | 77 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.5E-13 | 81 | 123 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MIERRKDDSA ASPEAKRKKK SKMKNKRRFS DEQIRLLESI FESESTKLEP RKKMQVATEL 60 GLQPRQVAIW FQNKRARWKS KQIEHDYAQL RANYDSLASG FESLIKEKES LLLEQLQMLN 120 EQLGKSDYEI NGVGKDLKRS DWSSSNRLNN NDNNDNNKSV DDFIASSEKW FNEDSGGLLD 180 PSTSSSPQSH WLNFWV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 19 | RRKDDSAASPEAKRKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.16489 | 0.0 | flower| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044573.1 | 1e-138 | homeobox-leucine zipper protein ATHB-12 isoform X1 | ||||
Swissprot | P46897 | 5e-38 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A067E066 | 1e-139 | A0A067E066_CITSI; Uncharacterized protein | ||||
STRING | XP_006441208.1 | 1e-107 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17513 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 2e-32 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029280m |
Publications ? help Back to Top | |||
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