PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g029257m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 197aa MW: 22458.4 Da PI: 7.0682

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g029257m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C++ gC+vkk+ver++ed ++v++tYeg+Hnhe orange1.1g029257m 101 MDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE 159 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-32	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.11E-27	94	161	IPR003657	WRKY domain
PROSITE profile	PS50811	30.917	96	161	IPR003657	WRKY domain
SMART	SM00774	8.6E-34	101	160	IPR003657	WRKY domain
Pfam	PF03106	3.4E-24	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNNLGSPNPN FNNFSYFPDH NIDHHQHQSS EFELSDYLLF DDHHPGFDED AYSSQSKASS 60 DKIIMGGSSS GATSEKNNMR KMKMEVGQRF AFRTKSELEV MDDGFKWRKY GKKSVKNSPN 120 PRNYYKCSTG GCQVKKRVER DREDSSYVIT TYEGTHNHES PCVVYDYYNH HQQQMPQNGW 180 TLQPNSSSSP PSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	91	161	7	77	Probable WRKY transcription factor 4
2lex_A	5e-25	91	161	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006427979.2	1e-134	probable WRKY transcription factor 50
Refseq	XP_006464492.1	1e-134	probable WRKY transcription factor 50
Swissprot	Q93WU9	1e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A067DSR1	7e-84	A0A067DSR1_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006464492.1	1e-134	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-41	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	orange1.1g029257m

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]