PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029214m | ||||||||
Common Name | CISIN_1g028980mg, LOC102611194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | YABBY | ||||||||
Protein Properties | Length: 198aa MW: 22047 Da PI: 8.5043 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.9 | 1.9e-64 | 8 | 170 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhC++l svn+a a q l+ ++ +++ e + + + + + +++ + + orange1.1g029214m 8 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS--KCNNKISAMRT 97 689**************************************************99996444444444444444433222..22222222223 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++k ++e+ r p PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g029214m 98 PTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170 3322.33444444455567889**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-68 | 9 | 170 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.28E-8 | 110 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 117 | 164 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSSCGIDVAP EQLCYIPCNF CNIVLAVSVP CSSLLDIVTV RCGHCSNLWS VNMAAAFQSL 60 SWQDVHHHQA PSYASPECRI DLGSSSKCNN KISAMRTPTN KATEERVVNR RESPHSTTPE 120 KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLEANNQPKL 180 DDASGNRLMS RTALRNK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11734 | 0.0 | callus| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090216 | 1e-69 | BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450895.1 | 1e-147 | axial regulator YABBY 5 isoform X1 | ||||
Refseq | XP_006475868.1 | 1e-147 | axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 1e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GNH4 | 1e-145 | A0A067GNH4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UIV5 | 1e-145 | V4UIV5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475868.1 | 1e-146 | (Citrus sinensis) | ||||
STRING | XP_006450895.1 | 1e-146 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-84 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029214m |
Entrez Gene | 102611194 |
Publications ? help Back to Top | |||
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