PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029106m
Common NameCISIN_1g022713mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 200aa    MW: 21898.4 Da    PI: 7.5109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029106mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.95.3e-16148199254
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        rk+ ++tkeq   Lee F+++++++  +++ LA++l+L  rqV vWFqNrRa+
  orange1.1g029106m 148 RKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199
                        788899******************96.679*********************98 PP
2HD-ZIP_I/II72.39.1e-24148199153
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                        +kk+rl+keq++lLEesF+++++L+p +K++lar+L+l+prqv+vWFqnrRAR
  orange1.1g029106m 148 RKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199
                        69***********************9.6899*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-15135197IPR009057Homeodomain-like
SuperFamilySSF466891.03E-14142199IPR009057Homeodomain-like
PROSITE profilePS5007114.139144199IPR001356Homeobox domain
SMARTSM003891.1E-6146199IPR001356Homeobox domain
CDDcd000864.34E-15148199No hitNo description
PfamPF000462.0E-13148199IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGFDDGCNTG LVLGLGFASA IETTPTNKAN NINIVNHQQL QLPKGTCFEP SLSLGLPGEI  60
YPEAATATTK KNSNSIDVNK GYEESAAAGV AEYQILNRQA SPHSAVSNSF SSGRVVKRER  120
DLSSEEIEVE KVISSRASDE DEDGVNARKK LRLTKEQSAL LEESFKQHST LNPQKQALAR  180
QLNLRPRQVE VWFQNRRAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.820.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426160.11e-142homeobox-leucine zipper protein HAT22
SwissprotP466049e-43HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A067GJG41e-145A0A067GJG4_CITSI; Uncharacterized protein
STRINGXP_006426160.11e-142(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.16e-44HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]