PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g028843m | ||||||||
Common Name | CISIN_1g028843mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23323 Da PI: 8.8442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G ++Wk +a + g++R++k+c++rw++yl orange1.1g028843m 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.8e-16 | 76 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l orange1.1g028843m 76 RGNISDDEEDLILRLHKLLGSR-WSLIAGRLP-GRTDNEIKNYWNSHL 121 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.841 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-29 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-12 | 25 | 70 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.93 | 75 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.2E-14 | 76 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 78 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.28E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPTKSNNNN NNNDASGKNV VNRGAWTAEE DRKLTEYIEI HGAKRWKNVA TESGLNRCGK 60 SCRLRWLNYL RPNIKRGNIS DDEEDLILRL HKLLGSRWSL IAGRLPGRTD NEIKNYWNSH 120 LSKKINHKHK TPQQPQQPAT TRLKVPENTS EIAPVNEEGG RQIANSEVNL DFDFSTEGLC 180 GLDWVNKFLQ LDDDHLWLTD QQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 21 | 125 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440271.1 | 1e-147 | transcription factor MYB114 | ||||
Swissprot | Q9LTF7 | 5e-52 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A067FDV0 | 1e-148 | A0A067FDV0_CITSI; Uncharacterized protein | ||||
STRING | XP_006440271.1 | 1e-146 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 4e-55 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g028843m |