PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028803m
Common NameCISIN_1g028803mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 204aa    MW: 23233.7 Da    PI: 5.0363
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028803mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.71.4e-1233597129
                NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                        +elvg++ktLvfy++rap+g kt W+mhe+rle
  orange1.1g028803m   3 RELVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 35 
                        5789**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.513153IPR003441NAC domain
SuperFamilySSF1019413.01E-18453IPR003441NAC domain
PfamPF023652.8E-5634IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTRELVGMRK TLVFYRNRAP NGIKTGWIMH EFRLETPHMP PKEDWVLCRV FHKSKGENSE  60
NLSPQFIYES AANNNASSFT PSAASPPTAD CRMINMPFGY HQQQHISSSA PGSYRNHNNQ  120
SSNSMLNLLQ FPTSQDQKNN NKNQSNDIIS SKSNYDDYGF IWEMEMDLQE NCCSLENDDN  180
NGGVASNLED DMRFELDNSM VFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443820.11e-149NAC domain-containing protein 21/22
RefseqXP_006479521.11e-149NAC domain-containing protein 21/22
TrEMBLA0A067EZ911e-151A0A067EZ91_CITSI; Uncharacterized protein
TrEMBLA0A2H5NJG11e-150A0A2H5NJG1_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006479521.11e-149(Citrus sinensis)
STRINGXP_006443820.11e-149(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-28NAC domain containing protein 74