PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g028717m | ||||||||
Common Name | CISIN_1g028717mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 206aa MW: 23841.4 Da PI: 10.2357 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.4 | 1.6e-30 | 36 | 123 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+ orange1.1g028717m 36 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 123 9*******************************************99.9***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-28 | 36 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MMENVNDQEM AVTKGSSDGE PYLGMEFESE EAAKVFYDAY ATHMGFIMRV DAFRRSMRDG 60 KVVWRRLVCN KEGFRKLRPR RSENRKPRAV TREGCKAMIV VKKEKTGKWV VTRFVKEHNH 120 PLVAIPANGR RSVLLSQTPD EKDVKIRELT AELQRERKRS AAYQEQLEMV LRDMENHSHH 180 LSRNIDDIVQ SVKQIEAKRI AASHC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6098 | 4e-38 | callus| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447969.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_006492211.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 1 | ||||
Swissprot | Q9SZL8 | 2e-29 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067ETW4 | 1e-151 | A0A067ETW4_CITSI; Uncharacterized protein | ||||
STRING | XP_006492211.1 | 1e-151 | (Citrus sinensis) | ||||
STRING | XP_006447969.1 | 1e-151 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-93 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g028717m |
Publications ? help Back to Top | |||
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