PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g028636m | ||||||||
Common Name | CISIN_1g024653mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23564.4 Da PI: 6.7752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.4e-08 | 153 | 200 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + + k + ++L + ++Y++sLq orange1.1g028636m 153 SHSLAERVRRGKINERLRCLQDIVPGC---Y-KTMGMTMMLDEIINYVQSLQ 200 8*************************9...3.44777899*******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-14 | 147 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-9 | 147 | 204 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 149 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.5 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 153 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-7 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MADFAQDLQY FRASSSFPFL DIDPNIEQIN NNLSVLDNTS LLNYQSFMPF SNPDNFFEFP 60 GNLAENFPGN FIQNNMLPVC HTVTSTKCES KNRKAVEISE SSNEDSSPVS EIETNKRKKN 120 SGRRKRVKGN EKEEEKSKEV VHVRARRGQA TDSHSLAERV RRGKINERLR CLQDIVPGCY 180 KTMGMTMMLD EIINYVQSLQ NQVEVS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006485801.1 | 1e-151 | transcription factor BEE 3 | ||||
Swissprot | Q8GWK7 | 3e-45 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A067EQJ9 | 1e-151 | A0A067EQJ9_CITSI; Uncharacterized protein | ||||
STRING | XP_006485801.1 | 1e-151 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 1e-38 | BR enhanced expression 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g028636m |
Publications ? help Back to Top | |||
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