PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g028526m | ||||||||
Common Name | CISIN_1g022713mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 22944.6 Da PI: 7.5766 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 148 | 200 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa orange1.1g028526m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAS 200 788899*********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 79.5 | 5.5e-26 | 148 | 201 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRA + orange1.1g028526m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASF 201 69**************************************************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 135 | 198 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-17 | 143 | 200 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.872 | 144 | 204 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-13 | 146 | 208 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.0E-16 | 148 | 200 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.96E-16 | 148 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MGFDDGCNTG LVLGLGFASA IETTPTNKAN NINIVNHQQL QLPKGTCFEP SLSLGLPGEI 60 YPEAATATTK KNSNSIDVNK GYEESAAAGV AEYQILNRQA SPHSAVSNSF SSGRVVKRER 120 DLSSEEIEVE KVISSRASDE DEDGVNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA 180 RQLNLRPRQV EVWFQNRRAS FHFLQDKA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.82 | 0.0 | flower| fruit| leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426160.1 | 1e-144 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 2e-44 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A067GGQ6 | 1e-152 | A0A067GGQ6_CITSI; Uncharacterized protein | ||||
STRING | XP_006426160.1 | 1e-143 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-45 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g028526m |
Publications ? help Back to Top | |||
---|---|---|---|
|