PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g028060m | ||||||||
Common Name | CISIN_1g028060mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 24457.5 Da PI: 5.4392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 2e-08 | 63 | 110 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+r+N++f L +l + + + +K +iL A++ +++L orange1.1g028060m 63 SKACREKLRRERLNDRFLDLSCILEPG---RPARTDKPAILDDAIRVLNQL 110 6778****************9999997...889***************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.16E-7 | 57 | 115 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-12 | 58 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.512 | 59 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 63 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-6 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 65 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDPSDWDDFI NYSFNDQNAS LDFSWPEQNG SADNDISSTG VVPPENENTR KRARSDSCSR 60 PGSKACREKL RRERLNDRFL DLSCILEPGR PARTDKPAIL DDAIRVLNQL RTESQELKET 120 NEKLQEEIKS LKAEKNELRE EKLILKADKE KLEQQLKVMA MPTGGYMPTH PAAYHAGLNK 180 MAVYPSYGLM PMWQYLPPSL HDTSRDHELR PPAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.4040 | 0.0 | fruit| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420195.1 | 1e-159 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 7e-84 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A067ER77 | 1e-158 | A0A067ER77_CITSI; Uncharacterized protein | ||||
TrEMBL | V4S3R9 | 1e-158 | V4S3R9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420195.1 | 1e-158 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 2e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g028060m |