PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027859m
Common NameCISIN_1g027074mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 218aa    MW: 25074.2 Da    PI: 5.8843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027859mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-18121175128
                NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        + F  tde+l    L++ ++g++l++ +vi++v+ y++ P++Lp      +  wy  +++++++         +++g W+a+g++ e++s +
  orange1.1g027859m  12 VDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHRPSNLP------DGVWYLVCSKENTS---------AQHGQWRAKGETCEIFS-N 85 
                        67999*****95.5************.99**************9......45799999987654.........5689*************.9 PP

                NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                        +  +g ++tL f++g+ p+ +ktdWvm+e+r+
  orange1.1g027859m  86 SYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                        99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-277140IPR003441NAC domain
PROSITE profilePS5100526.3128140IPR003441NAC domain
PfamPF023654.0E-1011117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCPPTASTPI DVDFASTDEN LFGSLERMIR GSPLPCNVIN DVNPYNHRPS NLPDGVWYLV  60
CSKENTSAQH GQWRAKGETC EIFSNSYIIG WRTTLEFFEG QVPNERKTDW VMQEFRITQK  120
RLYGDKKEED SSSLCRVFLS GKQSPNHEMQ QKLFSANINN ETHSHSTELS FDKDKDDTRQ  180
VSIIRHEVCQ PQHSGLVFCL LEWISCLNFV WFSLIFK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473456.11e-138NAC transcription factor 29-like isoform X2
RefseqXP_015384376.11e-138NAC transcription factor 29-like isoform X2
TrEMBLA0A067GXK01e-162A0A067GXK0_CITSI; Uncharacterized protein
STRINGXP_006473456.11e-137(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-17NAC domain containing protein 28