PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027800m
Common NameCISIN_1g021859mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 219aa    MW: 24555.8 Da    PI: 7.4576
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027800mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.52.4e-10171190120
               GATA   1 CsnCgttkTplWRrgpdgnk 20 
                        C+ C+ttkTplWR+gp+g+k
  orange1.1g027800m 171 CADCNTTKTPLWRSGPRGPK 190
                        ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.354165188IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-5165189No hitNo description
SMARTSM004015.5E-4165203IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-7169190IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.9E-8171190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTPNYHLSPV TPFPLELKED QLLNLNQPPS SSSPASCHNF FEPVQREGGF YYRESVLLRH  60
PKEVRILYSQ AAGSCDHPGP AVMDESGSES TGLKLSMSSE KEERNDQNQS ENSSSVKWMS  120
SKMRLMKKMM YSSPDAAAMQ KLEDHQKQPP SSSLEPDNGN NNNNTNTIRV CADCNTTKTP  180
LWRSGPRGPK VTKLILSIEK LPMLVFFFCV YIINSLFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451458.11e-140putative GATA transcription factor 22
RefseqXP_006475428.11e-140putative GATA transcription factor 22
TrEMBLA0A067F3K01e-161A0A067F3K0_CITSI; Uncharacterized protein
STRINGXP_006475428.11e-139(Citrus sinensis)
STRINGXP_006451458.11e-139(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-11cytokinin-responsive gata factor 1