PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027800m | ||||||||
Common Name | CISIN_1g021859mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 219aa MW: 24555.8 Da PI: 7.4576 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.5 | 2.4e-10 | 171 | 190 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ C+ttkTplWR+gp+g+k orange1.1g027800m 171 CADCNTTKTPLWRSGPRGPK 190 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.354 | 165 | 188 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-5 | 165 | 189 | No hit | No description |
SMART | SM00401 | 5.5E-4 | 165 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-7 | 169 | 190 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.9E-8 | 171 | 190 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTPNYHLSPV TPFPLELKED QLLNLNQPPS SSSPASCHNF FEPVQREGGF YYRESVLLRH 60 PKEVRILYSQ AAGSCDHPGP AVMDESGSES TGLKLSMSSE KEERNDQNQS ENSSSVKWMS 120 SKMRLMKKMM YSSPDAAAMQ KLEDHQKQPP SSSLEPDNGN NNNNTNTIRV CADCNTTKTP 180 LWRSGPRGPK VTKLILSIEK LPMLVFFFCV YIINSLFY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451458.1 | 1e-140 | putative GATA transcription factor 22 | ||||
Refseq | XP_006475428.1 | 1e-140 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A067F3K0 | 1e-161 | A0A067F3K0_CITSI; Uncharacterized protein | ||||
STRING | XP_006475428.1 | 1e-139 | (Citrus sinensis) | ||||
STRING | XP_006451458.1 | 1e-139 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 8e-11 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027800m |