PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027587m
Common NameCISIN_1g025985mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 222aa    MW: 24164 Da    PI: 4.387
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027587mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.6e-14163208348
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                        + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L ke
  orange1.1g027587m 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
                        679***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-7161219IPR004827Basic-leucine zipper domain
PfamPF001705.0E-13163208IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.542163208IPR004827Basic-leucine zipper domain
CDDcd147072.94E-17165207No hitNo description
SuperFamilySSF579591.76E-9165208No hitNo description
Gene3DG3DSA:1.20.5.1708.9E-13166208No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTVDGILRNV YNTTTASTTD ATLLDAQITL VDTNSNLIAN ENDQNGAVSA GAMKSVDDVW  60
REIVSGEKKE MKEEAIDEMM TLEDFLAKAG AVEDSAGGDD MDVKAFANVT ERLSGGVYAF  120
DQPAAASPFQ VEGAIVGFGN GVEVVGGRGK RGRVMLEPLD KAAQQRQRRM IKNRESAARS  180
RERKQAYQVE LESLAVRLEE ENEQLLKEKV IRYVTNAEES L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.106720.0fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473064.11e-151G-box-binding factor 4
SwissprotP427772e-51GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A067GVK31e-158A0A067GVK3_CITSI; Uncharacterized protein
TrEMBLV4V6P61e-157V4V6P6_9ROSI; Uncharacterized protein
STRINGXP_006473064.11e-150(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.14e-40bZIP family protein