PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027549m | ||||||||
Common Name | CISIN_1g027549mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23990.3 Da PI: 9.9117 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C ksF ++ +L+ H+r+H orange1.1g027549m 20 FSCIYCRKSFANHRSLRGHLRSH 42 7888******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-5 | 16 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.86E-5 | 17 | 43 | No hit | No description |
PROSITE profile | PS50157 | 10.783 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.4E-5 | 20 | 42 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0046 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MANLPSAADG ENLEKGTSAF SCIYCRKSFA NHRSLRGHLR SHNVQLKAAW RRNCPSNSCA 60 SIGSASTIVD PLSSNQPGNS CEVVGNNLAF HKRSSPNLTF SMNATFAGSG STPSAGFPLD 120 VSLSLGLNGV QKLRNDEIQT CQDGLAEGCV SKMVGFLNFG QGERIYPIDS LANIDVMKIS 180 KRAKIVPRWP VEIQKPQIKE SSLVKTMEKP GPALLNRRSQ QI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467456.1 | 1e-163 | uncharacterized protein LOC102611034 isoform X2 | ||||
TrEMBL | A0A067GEU7 | 1e-163 | A0A067GEU7_CITSI; Uncharacterized protein | ||||
STRING | XP_006467455.1 | 1e-158 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20644 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027549m |