PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g027468m | ||||||||
Common Name | CISIN_1g027468mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 25881.8 Da PI: 5.0945 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.5e-18 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le +Fe++ p +++ ++A++lgL+ rqV +WFqN+Ra+ k orange1.1g027468m 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 568************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 102.9 | 2.7e-33 | 38 | 129 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eqvk+LE +Fe+e + e++ K+++a eLglqprqva+WFqn+RAR ktkq+E++y++Lk+++++l+++ e +++e++ L +l++ orange1.1g027468m 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQK 129 79***********************************************************************************9999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-16 | 30 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.163 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.2E-14 | 36 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-12 | 39 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-16 | 39 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-15 | 39 | 91 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.2E-10 | 93 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MNSEIPETTA AAAVKFRGLN LDWTDMQQPI ASFGTGNNKR RFSDEQVKSL EFMFESEARP 60 ESRMKHRMAD ELGLQPRQVA IWFQNKRARS KTKQIEREYT KLKAEFETLA SSYELMRREH 120 QLLLVQLQKL KNLLGKGHED TNENSGDRKS ENEITTESNE RPSQIYVPSS DDRSRNIEST 180 VIMKDFAATN VEEQTESSGN WCKFESGFLD ETSSTLPWWE LWS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476287.1 | 1e-164 | homeobox-leucine zipper protein ATHB-12-like isoform X2 | ||||
TrEMBL | A0A067GMV8 | 1e-164 | A0A067GMV8_CITSI; Uncharacterized protein | ||||
STRING | XP_006476286.1 | 1e-161 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18057 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.2 | 5e-31 | homeobox 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g027468m |