PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027400m
Common NameCISIN_1g022072mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 225aa    MW: 24593.9 Da    PI: 5.623
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027400mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.97e-111233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       +++m+vkgLtl h+kSHLQkYRl
  orange1.1g027400m  1 MRTMNVKGLTLFHLKSHLQKYRL 23
                       689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-10124IPR009057Homeodomain-like
PfamPF143792.3E-165094IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRTMNVKGLT LFHLKSHLQK YRLASYLIES SANDNSLPNF PASDMNESYE VKEALRVQME  60
VQSKLHLQVE AEKHLQIRQN AQQRYLAMLE RACKILTDQI LGGAVVDADS EKCKGLGTKM  120
PRSYILDSLG FYTSQSVEVA EVQCPEELLP NLHPQRADCS TESCLTSHES SGGLTMEGSP  180
VGGKNSILSL DTTTGSLIWG EVKMGAQEIS LARENPSGIS GYGI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.169270.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449967.11e-162protein PHR1-LIKE 3 isoform X2
TrEMBLA0A067GG661e-165A0A067GG66_CITSI; Uncharacterized protein
STRINGXP_006467240.11e-159(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.13e-28G2-like family protein