PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027395m | ||||||||
Common Name | CISIN_1g027395mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25903.8 Da PI: 7.5383 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n+ qvt++kRr gi KKA+ELSvLCd++v +++fs++gkl yss orange1.1g027395m 10 KIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS 59 699999******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.824 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-23 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-19 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRRKLLMQK IDNYPALQVT YTKRRDGIVK KAKELSVLCD TDVGLLMFSP SGKLTKYSSS 60 RRIEDIFLRF ICDEKQEPLE NEDHLYRSLV HSKCEGEMLD LIKKKEELEK KLIELCERQF 120 DAEEKMSFYQ PKVEDITTIH EAVDHEKFLN SAIRRVEKLN AKLLQKESAS RIPESIELEA 180 ASFFDGNEVP VPPNSKKKGG IHQCVNITMH EQTHPPVSTQ RINT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3025 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447462.2 | 1e-127 | agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_006469733.1 | 1e-127 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A067F8R4 | 1e-164 | A0A067F8R4_CITSI; Uncharacterized protein | ||||
STRING | XP_006469733.1 | 1e-126 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16598 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 6e-24 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027395m |