PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027250m | ||||||||
Common Name | CISIN_1g026809mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WOX | ||||||||
Protein Properties | Length: 227aa MW: 26020.5 Da PI: 7.0313 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.7e-19 | 93 | 153 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le ++ + + +p ++++++++++l +++e++V++WFqNrRa+ k+ orange1.1g027250m 93 RQRWTPTPAQLQILEHVYDEcKGTPRKQKIQDMTAELakhgQISETNVYNWFQNRRARLKR 153 89*****************9889***********************************997 PP | |||||||
2 | Wus_type_Homeobox | 93.2 | 2.4e-30 | 92 | 155 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe++y++ tP k++iq++taeL+++G+i+++NV++WFQNr+aR ++kq orange1.1g027250m 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-15 | 86 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-16 | 88 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.475 | 89 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-12 | 91 | 158 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.6E-17 | 93 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.97E-12 | 93 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKMEWPNFQQ GGEMERQFQQ DGGDTSNGLC VKVMTDEQME LLRKQIAVYA MICEQLVQMH 60 KVFSAQNEIA GMRMGNPYFD PFVASGSQKL TARQRWTPTP AQLQILEHVY DECKGTPRKQ 120 KIQDMTAELA KHGQISETNV YNWFQNRRAR LKRKQSGVVP NNAESEAETV THAESRKQNP 180 ESIQSLEDSA PPPRDEDIYP QSPDLGNKFF CFNVLLNKYK LIFSHM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARLKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2328 | 0.0 | flower| fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435385.1 | 1e-154 | WUSCHEL-related homeobox 13 | ||||
Refseq | XP_006473808.1 | 1e-154 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 6e-64 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A067HBM2 | 1e-171 | A0A067HBM2_CITSI; Uncharacterized protein | ||||
STRING | XP_006473808.1 | 1e-154 | (Citrus sinensis) | ||||
STRING | XP_006435385.1 | 1e-154 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-65 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027250m |
Publications ? help Back to Top | |||
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