PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027074m
Common NameCISIN_1g027074mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 229aa    MW: 26308.6 Da    PI: 5.3246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027074mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.41.2e-18121175128
                NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        + F  tde+l    L++ ++g++l++ +vi++v+ y++ P++Lp      +  wy  +++++++         +++g W+a+g++ e++s +
  orange1.1g027074m  12 VDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHRPSNLP------DGVWYLVCSKENTS---------AQHGQWRAKGETCEIFS-N 85 
                        67999*****95.5************.99**************9......45799999987654.........5689*************.9 PP

                NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                        +  +g ++tL f++g+ p+ +ktdWvm+e+r+
  orange1.1g027074m  86 SYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                        99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-257150IPR003441NAC domain
PROSITE profilePS5100525.258151IPR003441NAC domain
PfamPF023654.6E-1011117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MCPPTASTPI DVDFASTDEN LFGSLERMIR GSPLPCNVIN DVNPYNHRPS NLPDGVWYLV  60
CSKENTSAQH GQWRAKGETC EIFSNSYIIG WRTTLEFFEG QVPNERKTDW VMQEFRITQK  120
RLYGDKKEEC ELCICLDNVQ DSSSLCRVFL SGKQSPNHEM QQKLFSANIN NETHSHSTEL  180
SFDKDKDDTR QVSIIRHEVC QPQHSGLVFC LLEWISCLNF VWFSLIFK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952493.11e-146NAC transcription factor 29-like isoform X1
RefseqXP_024952494.11e-146NAC transcription factor 29-like isoform X1
RefseqXP_024952495.11e-146NAC transcription factor 29-like isoform X1
TrEMBLA0A067H0J51e-170A0A067H0J5_CITSI; Uncharacterized protein
STRINGXP_006434934.11e-145(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-17NAC domain containing protein 52