PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027008m | ||||||||
Common Name | CISIN_1g024467mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Whirly | ||||||||
Protein Properties | Length: 230aa MW: 25192.8 Da PI: 9.4681 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 217.6 | 1.1e-67 | 90 | 228 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 s+yk+kaal+v+++ p+f++ldsg++kl+r+G+++l++a+a+++r+ydW++kq+f+ls+te+++lv l+++esceffhdp++++s+eGkvrk orange1.1g027008m 90 SIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRK 181 7******************************************************************************************* PP Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +lkvePlpdGsG+f+nlsv+n+l++ +es+++Pv++ae++vl s+++ orange1.1g027008m 182 VLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFN 228 ******************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 8.6E-67 | 80 | 228 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.02E-61 | 84 | 228 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.5E-61 | 91 | 225 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMLQLQCLSS QTLNPKLCPF HSLSNSKGNG FGSISVTEST SIKKKKLYVK CRQSEYYEQK 60 SFSASPSNSS YAPTDVAVGT LPTRVYVGHS IYKGKAALTV EPRGPEFVSL DSGAVKLSRE 120 GFVMLQFAPA AGVRQYDWSR KQVFSLSVTE IGSLVALGAR ESCEFFHDPF KGKSEEGKVR 180 KVLKVEPLPD GSGHFFNLSV QNKLINLDES IYIPVTRAEY TVLVSAFNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 2e-94 | 81 | 228 | 5 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 2e-94 | 81 | 228 | 5 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 2e-94 | 81 | 228 | 5 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 2e-94 | 81 | 228 | 5 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6135 | 1e-69 | callus| fruit| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006483225.1 | 1e-167 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9M9S3 | 2e-98 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A067GSY1 | 1e-168 | A0A067GSY1_CITSI; Uncharacterized protein | ||||
STRING | XP_006483225.1 | 1e-167 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-97 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027008m |