PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026974m | ||||||||
Common Name | CISIN_1g026974mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26388 Da PI: 7.0964 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 68 | 120 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq e Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k orange1.1g026974m 68 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 5689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 114.4 | 6.7e-37 | 67 | 157 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eq++lLE++F +e+kLe++rK +la eLgl+prqvavWFqnrRAR ktk++E+ y++Lk+a+++++ e++rLe+ev++L+e+l+ orange1.1g026974m 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 157 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.099 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-18 | 65 | 126 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 66 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.88E-15 | 67 | 123 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 68 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-19 | 69 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.5E-6 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-6 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MIREMIITNT NHQVEDNKSN MVLLSQFYPS DVLTPTGIVP QQGEPSKPKR RQRKRNTNGN 60 GGFRALKKRK LTAEQAELLE MHFGNEHKLE SDRKDKLAAE LGLDPRQVAV WFQNRRARDK 120 TKKIEETYAT LKTAHENVVV EKTRLESEVA TLKEKLSVAE KEIKKMSELI EGISLNNPSA 180 TIPTDMDTVD SPFTLDPFAG NLGWFDYEDL LYLLQQNYIS AAEWLLLHTY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 69 | RKRNTNGNGGFRALKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7226 | 0.0 | flower| fruit| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425728.1 | 1e-171 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_006466750.1 | 1e-171 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-60 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A067GVJ6 | 1e-170 | A0A067GVJ6_CITSI; Uncharacterized protein | ||||
STRING | XP_006466750.1 | 1e-170 | (Citrus sinensis) | ||||
STRING | XP_006425728.1 | 1e-170 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 8e-63 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026974m |
Publications ? help Back to Top | |||
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