PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026950m | ||||||||
Common Name | CISIN_1g026950mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 25883.2 Da PI: 9.2281 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.5e-32 | 152 | 210 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ orange1.1g026950m 152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 210 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-33 | 137 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-28 | 144 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 147 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 152 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 153 | 209 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSSTSQAMLN QSLFEEQEMP TQMGFFPFAS NLNFAPLGNQ SLKAFPSSLA AADVPSTINL 60 TETLLSSAAA AGNLKQTTCD NLGGGAQLLS LQRSSANLWA WGGDVNECLS NKRTVDDHHL 120 GVAAMKMKKI KSRRKVREPR FCFKTMSDID VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ 180 DNCRVKKRVE RLAEDPRMVI TTYEGRHVHS PSHDQEDSSQ ASSHLNNFFW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 143 | 209 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 143 | 209 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006464513.1 | 1e-174 | probable WRKY transcription factor 13 isoform X1 | ||||
Swissprot | Q9SVB7 | 1e-63 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A067DNU1 | 1e-174 | A0A067DNU1_CITSI; Uncharacterized protein | ||||
STRING | XP_006464513.1 | 1e-174 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 6e-64 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026950m |