PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g026901m

Common Name

CISIN_1g0269011mg, LOC102617055

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 232aa MW: 24971 Da PI: 4.84

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g026901m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.3	3.6e-56	39	143	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdif orange1.1g026901m 39 QLQMFWSYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 130 89***998899*************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivprde+k orange1.1g026901m 131 DFLVDIVPRDEIK 143 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.53E-33	27	133	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.8E-37	53	125	IPR009072	Histone-fold
Pfam	PF00808	1.6E-20	61	124	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MENNQQGQSS SYPPQPPSAA AAATATAPFH HLIQQQQQQL QMFWSYQRQE IEQANDFKNH 60 QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI 120 AAAITRTDIF DFLVDIVPRD EIKDEAAGLG GMVGATASGV PYYYPPMGQP TGTAGPGGMM 180 IGRPAVDPTG VYVQPPSQAW QSVWQTPAGT GDDGSYGSGG SGGPANLDGQ G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-55	47	139	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.3802	0.0	callus\| flower\| fruit\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436849.1	1e-171	nuclear transcription factor Y subunit C-1
Refseq	XP_006493208.1	1e-171	nuclear transcription factor Y subunit C-1
Refseq	XP_024042168.1	1e-171	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	1e-117	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A067E8S6	1e-170	A0A067E8S6_CITSI; Uncharacterized protein
TrEMBL	V4TJW4	1e-170	V4TJW4_9ROSI; Uncharacterized protein
STRING	XP_006493208.1	1e-171	(Citrus sinensis)
STRING	XP_006436849.1	1e-171	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-112	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	orange1.1g026901m
Entrez Gene	102617055

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]