PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026855m
Common NameCISIN_1g026855mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 233aa    MW: 26371.2 Da    PI: 8.7532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026855mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-101760344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       +WT eEd+l+ +a   ++ +   +W++Iar ++ g++  +++ r+
  orange1.1g026855m 17 SWTREEDKLFERALVTFPEEtpgRWERIARQVP-GKSSVDVQRRY 60
                       7*****************99*************.**********9 PP
2Myb_DNA-binding431.1e-13116160347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  orange1.1g026855m 116 PWTAEEHRLFLIGLEKYGKGDWRSISRNAVVSRTPTQVASHAQKY 160
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-101466IPR001005SANT/Myb domain
PROSITE profilePS500907.9331664IPR017877Myb-like domain
SuperFamilySSF466894.97E-121669IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-71663IPR009057Homeodomain-like
PfamPF002491.3E-81761IPR001005SANT/Myb domain
CDDcd001672.79E-91860No hitNo description
PROSITE profilePS5129418.287109165IPR017930Myb domain
SuperFamilySSF466897.48E-17110166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-12113159IPR009057Homeodomain-like
SMARTSM007173.3E-10113163IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-16113163IPR006447Myb domain, plants
PfamPF002493.5E-11116160IPR001005SANT/Myb domain
CDDcd001671.73E-9116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MIHNKIDYSY SASTSSSWTR EEDKLFERAL VTFPEETPGR WERIARQVPG KSSVDVQRRY  60
DDLVLDLRKI EAGLVELPGY EDEMDSPGRV AESGASLGNN SNRSRDRETE RRKGVPWTAE  120
EHRLFLIGLE KYGKGDWRSI SRNAVVSRTP TQVASHAQKY FLRMNSVRKD KKRSSIHDIT  180
TVDAAGSSSQ SYDPSWVGPL TDQLETHRLG SPSDFNDQGR SIGGYHSFRF PM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13090.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424203.11e-171transcription factor SRM1
SwissprotQ8S9H76e-61DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067ESJ11e-170A0A067ESJ1_CITSI; Uncharacterized protein
TrEMBLV4RS971e-170V4RS97_9ROSI; Uncharacterized protein
STRINGXP_006424203.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]