PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026842m | ||||||||
Common Name | CISIN_1g013528mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 25268 Da PI: 4.3508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.5 | 1.7e-24 | 169 | 218 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQ orange1.1g026842m 169 KMKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQ 218 5789*****************.***************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.119 | 166 | 225 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 167 | 218 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.09E-16 | 167 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-24 | 169 | 221 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 172 | 219 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MLAVSPLPNT SKDENQGEMA STFAIDTHEF PDFSDTNLLD SIDFDDLFAG INDSDVLPDL 60 EMDPEILAEF SAGGGDQESE MKASASVEKV EENNFKKEEE DKVSSCGSGA ASGSASGSNF 120 SKEEEIVSKR EEPVSASLKT LAKDGDKGRS KSSTQTKNNN NNNNQGKRKM KVDWTPELHR 180 RFVQAVEQLG VDKAVPSRIL ELMGIDCLTR HNIASHLQVL ILSLISCLIT IN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-15 | 166 | 224 | 2 | 60 | ARR10-B |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11775 | 1e-75 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209002 | 2e-56 | AC209002.1 Populus trichocarpa clone POP040-E22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386089.1 | 1e-167 | transcription activator GLK1-like | ||||
Swissprot | Q9SIV3 | 7e-48 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A067E6T8 | 1e-168 | A0A067E6T8_CITSI; Uncharacterized protein | ||||
STRING | XP_006446694.1 | 1e-156 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 4e-42 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026842m |