PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026836m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 233aa MW: 27075.4 Da PI: 10.7326 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2e-07 | 70 | 90 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr f+r G+C +Gd CkF+H orange1.1g026836m 70 VCRAFQR-GECTRGDGCKFSHN 90 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.859 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 67 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-4 | 67 | 91 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 70 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 70 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPSTKIRLTF TSAASLSISL KAIFSRFLPN NLNGAQILGR TIRVDHVAKY KKKEEEDEET 60 RQRMREERGV CRAFQRGECT RGDGCKFSHN EQRAANTGGG PQDRSSRWGH EKFEGFSWGK 120 NDSSSRATGS GRVALEGNPN QSDRREEKRS IRHDHREKPR EDHGRREDKR SRRHSDNNEF 180 EARSREDHYR RDEKRPKRHE SESYLREDQD RRGGDKSSTG RGDSSSHRHR ER* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10904 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035431.1 | 1e-142 | zinc finger CCCH domain-containing protein 42 isoform X2 | ||||
TrEMBL | A0A2H5NDW7 | 1e-140 | A0A2H5NDW7_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4SCP3 | 1e-140 | V4SCP3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425052.1 | 1e-141 | (Citrus clementina) |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026836m |