PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026809m
Common NameCISIN_1g026809mg, LOC102621096
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 234aa    MW: 26715.1 Da    PI: 5.3865
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026809mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-1993153257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+t+ ql++Le ++ + + +p ++++++++++l    +++e++V++WFqNrRa+ k+
  orange1.1g026809m  93 RQRWTPTPAQLQILEHVYDEcKGTPRKQKIQDMTAELakhgQISETNVYNWFQNRRARLKR 153
                        89*****************9889***********************************997 PP
2Wus_type_Homeobox93.12.6e-3092155265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe++y++   tP k++iq++taeL+++G+i+++NV++WFQNr+aR ++kq
  orange1.1g026809m  92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1586156IPR009057Homeodomain-like
SuperFamilySSF466893.81E-1688155IPR009057Homeodomain-like
PROSITE profilePS5007113.47589154IPR001356Homeobox domain
SMARTSM003894.6E-1291158IPR001356Homeobox domain
PfamPF000462.8E-1793153IPR001356Homeobox domain
CDDcd000862.82E-1293155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKMEWPNFQQ GGEMERQFQQ DGGDTSNGLC VKVMTDEQME LLRKQIAVYA MICEQLVQMH  60
KVFSAQNEIA GMRMGNPYFD PFVASGSQKL TARQRWTPTP AQLQILEHVY DECKGTPRKQ  120
KIQDMTAELA KHGQISETNV YNWFQNRRAR LKRKQSGVVP NNAESEAETV THAESRKQNP  180
ESIQSLEDSA PPPRDEDIYP QSPDLGIDQM IGKMEIPGSF SFHWQVDRYD MLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARLKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.23280.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435385.11e-177WUSCHEL-related homeobox 13
RefseqXP_006473808.11e-177WUSCHEL-related homeobox 13
SwissprotO817881e-63WOX13_ARATH; WUSCHEL-related homeobox 13
SwissprotQ5QMM31e-63WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A067GZW51e-176A0A067GZW5_CITSI; Uncharacterized protein
TrEMBLV4TAU11e-176V4TAU1_9ROSI; Uncharacterized protein
STRINGXP_006473808.11e-177(Citrus sinensis)
STRINGXP_006435385.11e-177(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-66WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]