PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026607m
Common NameCISIN_1g026607mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 237aa    MW: 26166.8 Da    PI: 5.8811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026607mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-21109159255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g++vAeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +++g
  orange1.1g026607m 109 RYRGVRRRP-WGKFVAEIRDPKKNG--TRIWLGTYNTPEDAALAYDRAAFNMRG 159
                        69*******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.46E-32108169No hitNo description
SMARTSM003801.6E-39109173IPR001471AP2/ERF domain
PROSITE profilePS5103223.512109167IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-23109168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32109168IPR001471AP2/ERF domain
PfamPF008473.3E-15109159IPR001471AP2/ERF domain
PRINTSPR003673.4E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.4E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MYKKNISPSE LALLESISQY LLDDDATSFQ IPISSPSETT INSNETLSFT ENSDVSNDME  60
TYRALHDAIN VGWISFDQID DETDGTSTST TKSTPDRTEV ARDTLVGARY RGVRRRPWGK  120
FVAEIRDPKK NGTRIWLGTY NTPEDAALAY DRAAFNMRGS KAKLNFPHLI GSNVEPVPLG  180
RVTKKRASPE PSSPSSSSSS SSSSSFTVLS YDSPKPKRRN YGISFCTSDV NWENVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-30107172368ATERF1
3gcc_A6e-30107172368ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.94741e-158root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445418.11e-151ethylene-responsive transcription factor 13
RefseqXP_006464838.11e-151ethylene-responsive transcription factor 13-like
SwissprotQ8L9K17e-45ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A067HCD91e-172A0A067HCD9_CITSI; Uncharacterized protein
STRINGXP_006464838.11e-151(Citrus sinensis)
STRINGXP_006445418.11e-151(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]